STATISTICS for BASIC MEDICAL SCIENCES
(BMS 1200)
Course Director : Carl I. Thompson, Ph.D.
Dept. of Physiology, Rm. 621
Phone # : (914) 594 - 4106
E-Mail: Carl_Thompson@NYMC.EDU
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Statistics for Basic Medical Sciences (BMS 1200) Summer 2004 Schedule 4-6 Pm Rm 609 Physiology
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Month |
Date |
No. |
Day |
Topic |
Lecturer |
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June |
08-Jun |
1 |
Tuesday |
Introduction / Why Statistics |
Dr. Thompson |
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Basic Definitions |
Dr. Thompson |
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10-Jun |
2 |
Thursday |
Normal Curve, Confidence Interval |
Dr. Thompson |
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Poisson Distribution |
Dr. Thompson |
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15-Jun |
3 |
Tuesday |
Binomial Dist./Descrete Probability |
Dr. Moy |
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Bayes Theorem |
Dr. Moy |
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17-Jun |
4 |
Thursday |
Test of a Hypothesis/T-test |
Dr. Thompson |
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Experimental Design/Power Analysis |
Dr. Thompson |
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22-Jun |
5 |
Tuesday |
Mid-Term Test |
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24-Jun |
6 |
Thursday |
Review of Test |
Dr. Thompson |
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Multiple Groups -- ANOVA |
Dr. Hamby |
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29-Jun |
7 |
Tuesday |
Review of ANOVA |
Dr. Hamby |
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ANOVA Models |
Dr. Thompson |
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01-Jul |
8 |
Thursday |
Review of ANOVA Models |
Dr. Thompson |
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Post Hoc Analysis |
Dr. Thompson |
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July |
06-Jul |
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Tuesday |
Review of Post Hoc Analysis |
Dr. Thompson |
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Group Comparison--Non-Parametric |
Dr. Thompson |
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08-Jul |
9 |
Thursday |
Review of Non-Parametric |
Dr. Thompson |
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Survival Analysis |
Dr. Hamby |
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13-Jul |
10 |
Tuesday |
Review of Survival Analysis |
Dr. Hamby |
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Regression Analysis/Correlation |
Dr. Hamby |
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15-Jul |
11 |
Thursday |
Review of Regression |
Dr. Thompson |
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Multiple Regression |
Dr. Thompson |
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20-Jul |
12 |
Tuesday |
Review of Regression |
Dr. Thompson |
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Non-linear Curve Fitting Modeling |
Dr. Thompson |
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22-Jul |
13 |
Thursday |
Review of Curve Fitting |
Dr. Thompson |
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Models of ANCOVA, MANCOVA, etc. |
Dr. Thompson |
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27-Jul |
14 |
Tuesday |
Epidemiology |
Dr. Mamtani |
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Screening |
Dr. Mamtani |
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29-Jul |
15 |
Thursday |
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Last Revision: Jun 08, 2004 |
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Course Description and Pre-requisites:
The course is directed toward students involved in scientific data analysis in the basic science disciplines. The techniques presented will be those currently in use throughout the basic medical sciences departments. While no prerequisite statistics course is required, some basic familiarity with statistics is expected and can be achieved from any elementary statistic text. Statistics for Basic Medical Sciences is open to all students in the Ph.D. program. All others wishing to register must do so with the permission of the course directors.
Class Meeting:
The course will meet twice a week for 2 hour periods starting at 4:00 and lasting until 6:00. The first 5 sessions will consist of mainly didactic lectures and assigned homework problems. This section will cover the fundamentals of basic statistical concepts as a foundation to the second portion of the course. Sessions 7 through 15 will be devoted to particular topics with the emphasis on problem solving. Each session will begin with an in-depth discussion of the problem assignment(s) from the preceding session. The second portion of each session will be a didactic presentation of the material for the next problem assignments and will include an introduction of the statistical problem to be worked on before the next class. Each of the problem sets will consist of representative data from research laboratories within the basic sciences illustrating a particular statistical approach to problem solving and data representation. The discussion of the problem set will include appropriate statistical tests, presentation and interpretation of analysis.
Grading policy:
The course will represent two (2) credit hours and meet for 16 two hour sessions. The mid-term exam will represent 20% of the course grade and will cover the basic material through the first 5 sessions. The emphasis of the exam will be on concepts and
Astatistical vocabulary@. The final end-term project will consist of an appropriate analysis and statistical discussion of an experimental data set of the student=s choosing (with approval of instructor). This end term grade will be worth 20% of the overall grade. The remaining 60% of the course grade will be based on performance in class discussions and the problem sets which must be turned in each session.Required Material :
NCSS 2001 and PASS 2000 Statistical
Software Package
NCSS - Statistical Software that is easy to use. Includes Data Analysis, Statistical Graphics, and Statistical Analysis.
http://www.ncss.com/
Data file downloads for NCSS
exercises :
Data File Downloads for NCSS
Recommended books:
Biostatistics.
A Methodology for the Health Sciences.
Lloyd D. fisher and Gerald vanBelle.
Biometry. Robert R. Sokal and
F. James Rohlf
Biostats Basics. A student handbook.
James L. Gould and Grant F. Gould.
http://www.whfreeman.com/gould/
Biostatistics: A Foundation for Analysis in the Health Sciences.
Wayne W. Daniel
Basic Statistics for the Health Sciences. Jan
W. Kuzma
Epidemiology Biostatistics and Preventive Medicine.
James
F. Jekel, Joann G. Elmore and David L. Katz.
Biostatistics The bare essentials.
Norman and Streiner.
Suggested Links :
General Information
Guidelines for reporting statistics in journals
published by the American Physiological Society.
This Editorial provides a number of useful guidelines to consider in
providing
sufficient detail to properly describe and use statistical techniques in the
preparation
of a manuscript.
Statistical tutorials and eBooks
Concepts and Applications of Inferential Statistics.
Has specific Java based calculators and a fairly complete introductory
statistical text on line in PDF. Also has PDF downloads of useful tables.
Richard Lowry
Professor of Psychology
Vassar College
Poughkeepsie, NY USA
http://faculty.vassar.edu/lowry/webtext.html
The Statistics Homepage E-Book
http://www.statsoftinc.com/textbook/stathome.html
Statistics
at Square One This is an eBook on statistics from the British
Medical Journal. The portions covered are well presented and should
provide a quick reference to facilitate the material presented in class.
http://bmj.com/collections/statsbk/index.shtml
Statnotes: An Online Textbook, by G. David
Garson.
This is an excellent set of notes that concisely describes many useful
statistical techniques. The sections on ANOVA and related topics (ANCOVA
for example) are very readable.
http://www2.chass.ncsu.edu/garson/pa765/statnote.htm
He also includes a link to Dave Garson's :
Guide to Writing Empirical Papers, Theses, and Dissertations
This is the Home page of a course in
Biometry, or
Biostatistics, offered at Arizona State
University by Dr. John Nagy. His Handouts are
particularly clear and concise and may provide useful examples and
clarification.
http://lsvl.la.asu.edu/bio415/jnagy/
The Prism Guide to
Interpreting Statistical Results which is a nearly complete guide to statistical
analysis. While tailored toward using the Prisim software, it is an
excellent overall presentation of statistical techniques. This site
includes a library of technical articles that can provide useful insight into
many important areas of specific data analysis :
http://www.graphpad.com/index.cfm?cmd=library.index
http://www.graphpad.com/articles/interpret/principles/stat_principles.htm
This site provides an extensive guide to
Non-Linear Curve Fitting. One can download an extensive guide to
statistical techniques including curve fitting which is based on Analyzing
Data with GraphPad Prism by Dr.
Harvey Motulsky. The discussion is quite good.
http://www.curvefit.com/
This is written for researchers and students in the
sport and
exercise sciences. However, it is a concise and well illustrated approach
to understanding basic statistical analysis and data presentation.
http://www.sportsci.org/resource/stats/index.html
General WEB based links with Statistical
Resources
http://www.e-stat.org/copss/teaching.htm
The is the site at the FDA that defines Bioequivalence and
gives specific guidelines for the determination of bioequivalence and
bioavailability. In reference to the Federal Register notice on "Preliminary
Draft Guidance for Industry on In Vivo Bioequivalence Studies Based on
Population and Individual Bioequivalence Approaches: Availability",
vol. 62, No. 249, Dec. 30, 1997, the Food and Drug Administration (FDA) is
announcing the availability of data that were used by the Agency in support of
the proposal and the detailed
description of statistical methods for individual and population approaches.
One motivation for individual bioequivalence is to identify a
subject-by-formulation interaction.
http://www.fda.gov/cder/bioequivdata/
STATISTICAL METHODS IN RESEARCH I. Site contains some
excellent PowerPoint presentations of ANOVA and related topics.
http://sta6166.ifas.ufl.edu/Welcome.htm
Summary of Survey Analysis Software. This page is a summary
of available software for the analysis of surveys with complex sample designs.
Specifically, it includes software that can do variance estimation with such
survey data.
http://www.fas.harvard.edu/~stats/survey-soft/survey-soft.html
FTP site containing PowerPoint presentations from a
Elementary Statistics II course taught at Rutgers University. This
course are principles and methods of statistics, including hypothesis testing,
regression and correlation analysis, curve-fitting, and non-parametric methods.
http://www.stat.rutgers.edu/~mxie/stat212/
This site contains a fairly complete set of
statistical
lecture notes in PDF format covering many topics presented in this course.
http://www.dal.ca/~houlihan/psy3500/lectures.htm
A good primer to Kaplan-Meier curves and their use in
interpreting and presenting Survival Analysis by the folks at the CDC.
http://www.cdc.gov/epiinfo/MANUAL/kapmeier.htm
Other Software:
GraphPad
SAS
SigmaStat